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Popular repositories

  1. blacktie blacktie Public

    Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline

    Python 26 5

  2. table_enforcer table_enforcer Public

    Table Enforcer is my attempt to apply a sort of "test driven development" workflow to data cleaning and validation. A python package to facilitate the iterative process of developing and using sche…

    Python 17 1

  3. cookiecutter-snakemake-analysis-pipeline cookiecutter-snakemake-analysis-pipeline Public

    A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.

    Python 16 4

  4. Combinatorics Combinatorics Public

    This set of basic combinatorics functions supplements Python's itertools module.

    Python 9 1

  5. rSeqPipeline rSeqPipeline Public

    personal RNAseq analysis pipeline for the lab

    Python 8

  6. scipherPyProj scipherPyProj Public

    Collection of bioinformatic python code.

    Python 7 3