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Pull requests: wustl-oncology/analysis-wdls

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Pull requests list

test updated version of vep software (v113) immuno-paper implement before publication of immuno paper
#187 opened Mar 10, 2025 by malachig Loading…
@malachig
update to use new bam_readcount_helper image immuno-paper implement before publication of immuno paper
#186 opened Mar 10, 2025 by malachig Loading…
@malachig
1
Add pVACtools --percentile-threshold-strategy option
#185 opened Mar 10, 2025 by susannasiebert Loading…
1
1
Write pVACtools log files to the output
#184 opened Mar 4, 2025 by susannasiebert Loading…
1
1
Enable new --preferred-transcripts-tsv option in vep-annotation-reporter
#183 opened Mar 4, 2025 by susannasiebert Loading…
1
1
Pushing files from storage1 to fix some file permission issues
#181 opened Feb 27, 2025 by ksinghal28 Loading…
Add pvacsplice
#170 opened Dec 22, 2024 by mhoang22 Loading…
5
Write regions file as VCF is being processed instead of saving in memory
#159 opened Sep 23, 2024 by susannasiebert • Draft
1
4
Detect variant
#142 opened Dec 15, 2023 by sridhar0605 Loading…
adding somatic wgs to dockstore
#141 opened Dec 14, 2023 by sridhar0605 Loading…
6
Add Arriba (and respective pVACfuse step) to the immuno workflow enhancement New feature or request
#115 opened Apr 24, 2023 by susannasiebert Loading…
4
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