v1.0.3

This is the first release in the VaporUp fork of Vapor and captures the state of the parent repo at the time of forking with the following changes:

User-facing changes

Specific to this fork

• The help for the -t/--threshold parameter now states the default of 0.2 correctly (was claiming 0.0 before)

Since Vapor v1.0. 2 (i.e. the last release in the parent repo)

• Reference sequences with lowercase bases now get parsed correctly
• a new --low-mem option got added
• a new --version parameter got added
• a rounding error with the --top_seed_frac option got fixed (which could result in zero reported hits before)

Changes behind the scenes

• switched to pyproject.toml-based packaging
• pip will install the numpy dependency along with the package by default
• package version and self-reported version are kept in sync automatically