Update wastewater data #40
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# This workflow is to re-generate wastewater Re estimates | |
name: Calculate Wastewater-based Re | |
on: | |
# Option to manually trigger deploy | |
workflow_dispatch: | |
push: | |
branches: | |
- 'master' | |
paths: | |
# Only run when a relevant file is updated | |
- 'data/clean_data_bs.csv' | |
- 'data/clean_data_eawag.csv' | |
jobs: | |
estimate-ww-re: | |
runs-on: macOS-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
# Load repo and install R, package dependencies | |
- uses: actions/checkout@v3 | |
- uses: r-lib/actions/setup-r@v2 | |
- uses: r-lib/actions/setup-r-dependencies@v2 # install (possibly cached) dependencies from DESCRIPTION | |
# Run R script | |
- name: Estimate Re | |
run: Rscript R/estimate_wastewater_re.R | |
# Commit new files to data folder | |
- name: Commit files | |
run: | | |
git config --local user.name actions-user | |
git config --local user.email "[email protected]" | |
git add app/data/ww_loads.csv | |
git add app/data/ww_re_estimates.csv | |
git commit -am "GH ACTION calculate-ww-re $(date)" | |
git fetch; git merge | |
git push origin master |