Pubmed Harvest

[ivanmrsulja]

Added an example of fetching publication metadata from pubmed based on the pubmed-http-fetch.

Steps to run:

• Examine the run-pubmed.sh script and type the location of the VIVO Harvester installation directory.
• Modify the vivo.model.xml file to provide parameters for accessing your VIVO web application.
• Modify the pubmedfetch.config.xml to point to your desired instance's endpoint, as well as other pubmed properties
• Shut down your VIVO instance (in order to free the TDB lock)
• Run run-pubmed.sh
• Restart your VIVO instance, reindex the search indexes and re-run the reasoner.