Release 0.4.0

• Added the ability to upload additional molecular file-types: .fa, .fasta.gz, .fa.gz
• Implemented study-level permission model for data submission with configurable prefix and suffix
• Method security applied to support study-level permissions
• Uploads are now batch queued using @transactional with Submission creation
• StudyIds added to Submission data model
• Dates now correctly displaying in API using ISO OffsetDateTime standard
• General code cleanup and refactoring
• Many tests added and/or updated

Release 0.3.0

• queue limit based on max conn pool size
• filename changes for downloads for uniformity
• fixed newline issue in the gzip produced fasta

Release 0.2.0

• Jenkins auto-deploy stage
• Dockerfile updated to not use host network mode (needs additional settings for score)
• Sample files updated to latest spec
• Added getSubmissionById endpoint
• download endpoint with/without gzip
• download endpoint set to unsecured
• isolate field in tsv as matcher for fasta header
• refactor of PayloadFileMapper plus tests
• SongScoreClient retries with backoff
• refactor TsvParser plus tests
• added CodecConfig class for enabling a larger maxHeadeSize for the multipart uploader
• Postgres connection pooling enabled, configurable in application.yaml
• Updates and additional exception classes (mapped to HTTP responses)
• Many of the tuples in the SubmissionService were refactored to dedicated classes
• Better labeling of reactor .log("Class::method) calls
• Tests added to cover most components
• BUGFIX: originalFileNames correctly being recorded

Release 0.1.3

• Fixes getLocalizedError() message calls resulting in null due to incorrect overriding of getMessage()

Release 0.1.2

• really really fixed CORS this time

Release 0.1.1

• Patches in CORS support

Release 0.1.0

First release with base functionality. Tests only partially there, will be fortified in coming releases.

Current features:

• submit tsv/fasta bundles for upload to SONG/SCORE
• query for submission/uploads
• SSE endpoint for uploads
• download analyses bundles (fasta) from SONG/SCORE