Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Do the setup and arch determination necessary to build old htslib on autoconf 2.70+ #3270

Merged
merged 5 commits into from
Apr 12, 2021

Conversation

adamnovak
Copy link
Member

Changelog Entry

To be copied to the draft changelog by merger:

  • vg is now able to build bundled htslib on Autoconf 2.70+

Description

This should fix the Mac CI build; Homebrew started shipping Autoconf 2.70, the first update in about 8 years, this week.

The htslib PR for fixing this in the install instructions is at samtools/htslib#1199 and hopefully that change will eliminate the need to manually use the host architecture guesser.

@adamnovak adamnovak merged commit 095c529 into master Apr 12, 2021
@adamnovak
Copy link
Member Author

@jltsiren is right that really we will need to upgrade vcflib to the current htslib-less version, and ship tabixpp and maybe htslib separately, but this seems to fix the build for now.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant