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@uw-loci

UW-Madison LOCI

Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri

Popular repositories

  1. curvelets curvelets Public

    Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

    MATLAB 21 17

  2. demo_wsi_superres demo_wsi_superres Public

    WSISR: Single image super-resolution for Whole slide Imaging using convolutional neural networks and self-supervised color normalization.

    Python 20 5

  3. he_shg_synth_workflow he_shg_synth_workflow Public

    Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis

    Python 9 5

  4. jar2lib jar2lib Public archive

    [RETIRED] Jar2lib tool for generating C++ proxy classes for a Java library

    C++ 6 1

  5. visbio visbio Public

    A multi-purpose biological analysis tool

    Java 6 1

  6. collagen-fiber-metrics collagen-fiber-metrics Public

    Deep generative models for collagen fiber centerline segmentation and extraction in cancer tissue

    Jupyter Notebook 6 1

Repositories

Showing 10 of 92 repositories
  • curvelets Public

    Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

    uw-loci/curvelets’s past year of commit activity
    MATLAB 21 17 17 0 Updated Jun 22, 2024
  • spieopticamadison.org Public

    UW SPIE/Optica website

    uw-loci/spieopticamadison.org’s past year of commit activity
    SCSS 0 CC0-1.0 1 3 0 Updated Jun 19, 2024
  • MultivariateAnalysis_FLIM Public

    Determination of Coefficient of Variation in complex FLIM datasets under different imaging conditions

    uw-loci/MultivariateAnalysis_FLIM’s past year of commit activity
    MATLAB 0 MIT 0 0 0 Updated Jun 6, 2024
  • qp-scope Public

    Controlling a microscope through some sort of python control interface (Pycromanager) and MicroManager

    uw-loci/qp-scope’s past year of commit activity
    Groovy 1 MIT 1 0 0 Updated May 21, 2024
  • basic-stitching Public

    Based on QuPath extension template - for basic tiling with no overlap resolution

    uw-loci/basic-stitching’s past year of commit activity
    Groovy 0 MIT 0 0 0 Updated May 15, 2024
  • collagen-fiber-metrics Public

    Deep generative models for collagen fiber centerline segmentation and extraction in cancer tissue

    uw-loci/collagen-fiber-metrics’s past year of commit activity
    Jupyter Notebook 6 1 0 0 Updated Mar 13, 2024
  • Flamingo_Control Public

    Controlling a Flamingo microscope from Python

    uw-loci/Flamingo_Control’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Jan 30, 2024
  • BasicStitching Public

    Mike's test for 0.4.x extension

    uw-loci/BasicStitching’s past year of commit activity
    Groovy 0 GPL-3.0 1 0 0 Updated Jan 30, 2024
  • uw-loci/optogensim’s past year of commit activity
    MATLAB 3 BSD-2-Clause 2 0 0 Updated Jan 19, 2024
  • website-tests Public

    Automated tests for LOCI websites

    uw-loci/website-tests’s past year of commit activity
    Perl 0 Unlicense 1 0 0 Updated Dec 6, 2023