Quickstart

Here's how to deploy htsget-rs's htsget-lambda to AWS:

1. Authenticate to your AWS account (preferably using SSO).
2. Modify the bin/settings.ts, according to your preferences.
3. Modify config/<YOUR_TOML_FILE>.toml pointed by bin/settings.ts accordingly.
4. Run cdk deploy.

If the above guidance is insufficient, please refer to the DEPLOY.md document for a more in-depth walkthrough settings and operations.

Does it work?

A simple curl command should be able to determine that:

curl "https://htsget-demo.ga4gh-demo.org/reads/service-info"

Should return a response similar to the following one (some fields elided for brevity):

{
  "name": "umccr-htsget-rs",
  "version": "0.1",
  "organization": {
    "name": "UMCCR",
    "url": "https://umccr.org/"
  },
  "htsget": {
    "datatype": "reads",
    "formats": [
      "BAM",
      "CRAM"
    ]
  },
  "contactUrl": "https://umccr.org/",
  "documentationUrl": "https://github.com/umccr/htsget-rs",
}

Please note that the example above assumes a publicly accessible endpoint. If you have an authz'd deployment, please use -H "Authorization: $JWT_TOKEN" flags added to your curl command.