Switch the usage example to use bio2zarr.tskit #1032
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Codecov ReportAll modified and coverable lines are covered by tests ✅
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## main #1032 +/- ##
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Coverage 93.41% 93.41%
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Lines 6496 6496
Branches 1107 1107
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jeromekelleher
approved these changes
Jun 2, 2025
| ancestral_states = np.load(f"{name}-AA.npy") | ||
| vdata = tsinfer.VariantData(f"{name}.vcz", ancestral_states) | ||
| vcf_zarr = zarr.load(f"{name}.vcz") | ||
| vdata = tsinfer.VariantData(f"{name}.vcz", ancestral_state=vcf_zarr["variant_allele"][:, 0]) |
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Ah, I see, this is ugly. sgkit-dev/bio2zarr#387
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