This repository contains code for MFmap (model fidelity map), a semi-supervised generative model integrating gene expression, copy number and mutation data, matching cell lines to cancer subtypes. MFmap compresses high dimensional omics data of cell lines and bulk tumours into subtype informative low dimensional latent representations and predic…
genomics
cancer
tcga
high-dimensional-data
generative-model
semi-supervised-learning
vae
cell-lines
ccle
cancer-subtype
drug-response
cancer-stratification
cellline-tumor-matching
translational-medcine
in-silico-perturbation
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Updated
Aug 23, 2021 - Python