A effort to collect all of the scRNA imputation methods and allow them to interface with scRNA-seq libraries (i. e. Seurat, SingleCellAssay, etc...)
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Updated
Dec 15, 2023 - R
A effort to collect all of the scRNA imputation methods and allow them to interface with scRNA-seq libraries (i. e. Seurat, SingleCellAssay, etc...)
Visualize expression of genes of interest after Conos.Cluster has been ran.
Single-cell multi-omic profiling of glioblastoma-associated myeloid cells
Large-scale Benchmarking of Single-cell Differential Expression Analysis Methods
hatpal is an R package for alternative polyadenylation (APA) identification & analysis using 3’ scRNA-seq (10x etc.).
Single Nuclei RNA Sequencing analysis of MND muscle cultures for the paper "Impaired signaling for neuromuscular synaptic maintenance is a feature of Motor Neuron Disease" by Ding et al, published in Acta Neuropathologica Communications.
RZiMM: A Regularized Zero-inflated Mixture Model for scRNA-seq Data
Regulatory networks with Direct Information
R function to generate a circos-style ggplot from single-cell TCR data.
Demultiplexing pipeline for sequencing data
An R package for cell type prediction from single cell omics data
Pipeline for flow cytometry anlaysis
OmicsSuite website for releasing new version.
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX
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