refresh-bio / FAMSA Star 138 Code Issues Pull requests Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM) bioinformatics proteomics longest-common-subsequence pfam multiple-sequence-alignment sequence-similarity guide-tree Updated Apr 29, 2024 C
refresh-bio / kmer-db Star 75 Code Issues Pull requests Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.). bioinformatics genomics indexing k-mer sequence-similarity Updated Mar 7, 2023 C++
giffordlabcvr / DIGS-tool Star 8 Code Issues Pull requests Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database. evolution comparative-genomics blast-searches genome-mining similarity-search molecular-genetics sequence-similarity dark-genome Updated May 31, 2024 Perl
DeepthiSudharsan / CGR-for-Sequence-Similarity Star 3 Code Issues Pull requests (Semester 4) Intelligence of Biological Systems - End Semester Project bioinformatics chaos-game-representation streamlit covid-19 sequence-similarity fcgr ccgr Updated Jun 8, 2021 Jupyter Notebook