FreshAirTonight / af2complex Star 140 Code Issues Pull requests Predicting direct protein-protein interactions with AlphaFold deep learning neural network models. bioinformatics deep-learning protein-protein-interaction protein-structure-prediction protein-protein-docking protein-complexes alphafold2 Updated Apr 9, 2024 Python
GMC-DRL / MetaBox Star 50 Code Issues Pull requests MetaBox: A Benchmark Platform for Meta-Black-Box Optimization with Reinforcement Learning (https://arxiv.org/abs/2310.08252) deep-reinforcement-learning hyperparameter-optimization evolutionary-algorithms black-box-optimization protein-protein-docking learning-to-optimize real-parameter-optimization meta-black-box-optimization benchmark-platform Updated Jun 11, 2024 Python
lightdock / lightdock-python2.7 Star 25 Code Issues Pull requests Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm bioinformatics simulation proteins pdb protein-structure dna protein scientific-computing swarm docking protein-protein peptides protein-design protein-protein-interaction swarm-intelligence gso protein-protein-docking anm protein-docking-framework Updated Mar 26, 2020 C++
brianjimenez / ftdock-mpi Star 9 Code Issues Pull requests MPI parallel version of the FTDock protein-protein docking algorithm mpi fftw docking protein-protein-docking ftdock Updated Sep 4, 2018 C
jackzzs-lab / ppdock-dove Star 0 Code Issues Pull requests A Deep-learning based dOcking decoy eValuation mEthod protein-protein-docking ppdock Updated Jul 27, 2020 Python