phylo42 / PEWO Star 12 Code Issues Pull requests Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees workflow benchmarking snakemake metagenomics metabarcoding placement taxonomic-classification phylogenetic-placement phylo-kmers Updated May 15, 2024 Python
phylo42 / RAPPAS Star 9 Code Issues Pull requests Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences metagenomics phylogenetics metabarcoding placement taxonomic-classification phylogenetic-placement kmers phylo-kmers genetic-markers Updated Dec 20, 2023 Java
phylo42 / sherpas Star 9 Code Issues Pull requests Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences virus recombination subtyping genotyping kmers ancestral-sequences phylo-kmers recombination-detection Updated Jan 12, 2021 C++