Ontology Access Kit: A python library and command line application for working with ontologies
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Updated
May 31, 2024 - Jupyter Notebook
The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants follow and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Operations Committee with Editorial, Technical and Outreach working groups.
Ontology Access Kit: A python library and command line application for working with ontologies
Source ontology files for the Gene Ontology
Mondo Disease Ontology
Repository for the Human Disease Ontology.
LLM-based ontological extraction tools, including SPIRES
An ontology of cell types
The home of the Drosophila anatomy ontology
The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)
Bootstrap an OBO Library ontology
Standard terms for annotating mammalian phenotypic data
Source files for various species-specific stage ontologies
PROV & SSN/SOSA mapped to BFO-ISO, RO, & CCO
Python toolkit for SSSOM mapping format
Integrated OBO ontology store
My personal website, served at https://cthoyt.com
Released 2003