monarch-initiative / ontogpt Star 516 Code Issues Pull requests LLM-based ontological extraction tools, including SPIRES nlp ai information-extraction named-entity-recognition language-models ner data-modeling relation-extraction monarchinitiative obofoundry gpt-3 linkml large-language-models llm oaklib chat-gpt Updated May 10, 2024 Jupyter Notebook
INCATools / ontology-access-kit Star 104 Code Issues Pull requests Discussions Ontology Access Kit: A python library and command line application for working with ontologies python rdf semantic-web owl ontology apis geneontology monarchinitiative obofoundry ontology-api oaklib Updated May 13, 2024 Jupyter Notebook
INCATools / semantic-sql Star 33 Code Issues Pull requests Discussions SQL and SQLite builds of OWL ontologies sql sparql owl ontologies obofoundry linkml relation-graph oaklib Updated May 11, 2024 Python
cmungall / semantic-llama Star 22 Code Issues Pull requests A knowledge extraction tool that uses a large language model to extract semantic information from text ai language-models obofoundry knowledge-extraction linkml oaklib Updated Jan 3, 2023 Python
Knowledge-Graph-Hub / kg-microbe Star 14 Code Issues Pull requests nlp go robot media knowledge-graph named-entity-recognition microbiology metabolism traits phenotypes data-modeling environments chemicals chebi envo oaklib anatomical-knowledge ncbitaxonomy cell-shapes Updated May 11, 2024 Jupyter Notebook
INCATools / oakx-plugin-cookiecutter Star 2 Code Issues Pull requests cookiecutter for OAK plugins plugins cookiecutter oaklib Updated Jan 11, 2023 Python