a *biosynformatic* fingerprint to explore natural product distance and diversity
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Updated
Jun 3, 2024 - Jupyter Notebook
a *biosynformatic* fingerprint to explore natural product distance and diversity
The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabolites by mass spectrometry in modern metabolomics is a prerequisite for elucidating this area. However, the identification of metabolites is a major bottleneck in traditional approaches hampering advances. Here…
This package contains a Rshiny webtool developed to allow the calculation of the metabolic predictors developed by the groups of MOLEPI and LCBC (LUMC), from raw Nightingale Health 1H-NMR metabolomics data.
A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.
This repository contains an HTML file presenting a webpage with a table of metabolites of a pathway collected from WikiPathways.
Python wrapper for ipath3
Bioconductor R package for BridgeDb
A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
Microbe-Metabolite INteractions-based metabolic profiles Predictor
A pipeline to infer metabolite concentrations from 1D NMR data using BATMAN (Bayesian AuTomated Metabolite Analyser for NMR)
Raw data and code for "The Metabolome Weakens RNA Helix Stability and Increases RNA Chemical Stability"
Tools for Metabolomics and mass Spectrometry users
Galaxy tools for BEAMSpy: Birmingham mEtabolite Annotation for Mass SpectroMetry (Python Package)
compare peak area of annotated metabolites using criteria and make comparing plots for all of them as well as volcano plot
A computational tool for the prediction and identification of metabolites.
A Drug Metabolite & Toxicity Property Predictor Based on Graph Neural Network
Metfrag for Galaxy
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