biobakery / melonnpan Star 33 Code Issues Pull requests Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles machine-learning tools public metagenomics bioconductor microbial-communities metabolomics microbiome multi-omics biobakery metabolite-prediction metabolite-compounds Updated Mar 26, 2024 R
YuLab-SMU / MMINP Star 12 Code Issues Pull requests Microbe-Metabolite INteractions-based metabolic profiles Predictor metabolites microbes metabolite-prediction Updated Mar 17, 2023 R
GRONINGEN-MICROBIOME-CENTRE / MicrobeRX Star 7 Code Issues Pull requests Discussions MicrobeRX cheminformatics computational-biology microbiome drug-design metabolic-models gut-microbiome enzymes metabolite-identification metabolite-prediction metabolite Updated Jan 31, 2024 Python
Wishartlab-openscience / Biotransformer Star 5 Code Issues Pull requests A computational tool for the prediction and identification of metabolites. java machine-learning cheminformatics human metabolism metabolomics exposure qsar microbial gut-microbiome metabolites expert-systems environmental environmental-science metabolite-identification metabolite-prediction Updated Aug 19, 2021 Java
Wishartlab-openscience / biotransformer-apis Star 1 Code Issues Pull requests Provide APIs to facilitate the integration of various libraries into BioTransformer. java cheminformatics metabolomics metabolite-identification metabolite-prediction Updated Aug 25, 2021 Java