R code in R Markdown used for ucm genomes and genome analysis course
-
Updated
Feb 16, 2024 - HTML
R code in R Markdown used for ucm genomes and genome analysis course
estimating the genome size from illumina genome-seq and plotting the genome size.
Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms
A useful python package for working on genomic coordinates.
This code compares the theoretical and practical length distributions of fragments.
MAGset is a tool to analyze and compare MAGs of known species
Create a Bioconductor/R SDK for Arvados
App to identify if a given DNA sequence is present in a viral genome repository. If found, it also gives the location and the protein it was a part of.
Analysis of input alphabet sequential data
Raw data and code for the Genomic Analysis of Singles and Pools (GASP) project - https://doi.org/10.1099/mgen.0.001111
Optimal AlphaMissense threshold based on VKGL variant classifications
A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data
MRA, A Novel Multi-head Algorithm to Discover all Tandem Repeats in One Scan of DNA Sequences.
Scrapes all the results of all the genome analysis performed by MiGA Online web tool and wirte them in a file.
a slint interface to the BIGG modeler database establishing all the links to the metanextx
Some snippet of code related to bioinformatics
A simple tool to generate hierarchical clustering trees from nucleotide sequences. Supports a number of distance metrics and clustering algorithms. Includes a large testset of SARSCOV2 genomes.
Analysis of drought metagenomic data using ENNB methods
Front-end for views and tables in web interface
ease of access gff files from tair for reading tair ids.
Add a description, image, and links to the genome-analysis topic page so that developers can more easily learn about it.
To associate your repository with the genome-analysis topic, visit your repo's landing page and select "manage topics."