Full results to accompany Zhu and Stephens (2018).
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Updated
Mar 28, 2019 - R
Full results to accompany Zhu and Stephens (2018).
enabling pathway analysis of curated chip-seq data
Analysis of enrichment of gene sets with a GUI and CLI
Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
Reference implementation of the paper Redundancy-aware unsupervised ranking based on game theory - application to gene enrichment analysis
A template package for integrating new pathway databases to ComPath
A resource of gene expression signatures derived from the DEE2 dataset (http://dee2.io)
GMT files for the mulea R package
UVA DSI Capstone :: Gene Set Creation Algorithm for Microarray Studies with Low Sample Size
COVID-19 Crowd Generated Gene and Drug Set Library
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
Tools to prepare and analyze a priori molecular signatures, such as gene sets.
muleaData is an ExperimentHubData Bioconductor package for the mulea R package
Package to calculate functional similarity between genes https://biocor.llrs.dev
Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
Ready-to-use curated genesets for cinaR
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