Python framework for doing ancestral sequence reconstruction
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Jul 8, 2024 - Python
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ancestral-sequence-reconstruction
Here are 10 public repositories matching this topic...
ARPIP: Ancestral sequence Reconstruction under PIP
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Oct 2, 2023 - C++
AncFlow: A snakemake based pipeline for the ancestral sequence reconstruction of clustered phylogenetic subtrees.
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Apr 3, 2024 - Python
Calculate conditional probability distributions of extant sequences given a phylogenetic tree, sequence alignment, and evolutionary model.
evolution cross-validation phylogenetics molecular-evolution likelihood ancestral-sequences ancestral-sequence-reconstruction
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Mar 7, 2023 - Python
This repository includes the scripts used for analysis investigating the dynamics of indels in mammalian orthologous proteins and the examination of the ancestral reconstruction of multiple-character indels under the PIP.
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Jul 31, 2024 - Jupyter Notebook
Ancestral Sequence Reconstruction (ASR)
phylogenetics biochemistry alignment ancestral-inference ancestral-sequences ancestral-sequence-reconstruction
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Nov 11, 2024 - Jupyter Notebook
BioPython for create ancestrals seqvences
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May 12, 2023 - Python
A set of useful Python scripts for computational evolutionary biologists
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Nov 17, 2023 - Jupyter Notebook
Calculate the parsimony cost of having an ancestral residue implied by an alignment and tree
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Oct 6, 2021 - Python
A new model-selection criteria for phylogenetics to calculate the predictive log-likelihood score.
cross-validation phylogenetics molecular-evolution iq-tree model-selection-criteria ancestral-sequence-reconstruction
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Dec 14, 2022 - Python
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