Fix build (#113) #527

	name: Full Test & Upload coverage
	on: [push, pull_request]
	jobs:
	run_pytest_upload_coverage:
	runs-on: ubuntu-latest
	env:
	OS: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	submodule: recursive
	fetch-depth: 0
	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: '3.13'
	- name: Build irspack (ubuntu)
	run: \|
	pip install --upgrade pip setuptools wheel
	sudo apt-get install lcov
	FLAGS="-fprofile-arcs -ftest-coverage"
	export CFLAGS="$FLAGS"
	export CXXFLAGS="$FLAGS"
	pip install -e . --verbose
	- name: Run pytest
	run: \|
	pip install setuptools wheel pytest pytest-mock pytest-cov
	pip install numpy scipy
	pip install jaxlib jax dm-haiku optax \|\| echo "JAX installation failed, skipping MultVAE tests"
	pip install lightfm \|\| echo "LightFM installation failed, skipping BPR tests"
	pytest --cov=./src/irspack tests/
	- name: Generate coverage (ubuntu)
	run: \|
	coverage xml
	lcov -d `pwd` -c -o coverage.info --ignore-errors empty \|\| echo "No C++ coverage data found"
	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	files: ./coverage.xml
	fail_ci_if_error: false
	verbose: true

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