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1. dellytools/delly dellytools/delly Public

   DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

   C++ 459 139

2. alfred alfred Public

   BAM Statistics, Feature Counting and Annotation

   C++ 147 12

3. wally wally Public

   Wally: Visualization of aligned sequencing reads and contigs

   C++ 112 6

4. gear-genomics/tracy gear-genomics/tracy Public

   Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

   C++ 107 21

5. gear-genomics/dicey gear-genomics/dicey Public

   In-silico PCR, primer design and padlock design for in-situ sequencing

   C++ 50 4

6. dellytools/sansa dellytools/sansa Public

   Structural variant VCF annotation, duplicate removal and comparison

   C++ 30 1