v0.0.8

What's Changed

• allow any object with render method to be used for label distribution by @tlambert03 in #83
• refactor: change default spectral_bins_per_emission_channel and max_psf_radius_aus by @tlambert03 in #84
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #85

Full Changelog: v0.0.7...v0.0.8

v0.0.7

What's Changed

• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #76
• feat: adding Identity PSF modality by @federico-carrara in #78
• feat: scaling each light source by the respective power by @federico-carrara in #79

Full Changelog: v0.0.6...v0.0.7

v0.0.6

What's Changed

• fix: allowing None type for 'CosemDataset' attributes by @federico-carrara in #67
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #60
• Fix cosem images download error by @veegalinova in #69
• Implementing Illumination/Irradiance as a (W, C, Z, Y, X) array by @federico-carrara in #63
• refactor: remove pint from models by @tlambert03 in #71
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #72
• fix: typos by @tlambert03 in #75
• refactor: rewrite simulation stages, improve optical config spectral considerations by @tlambert03 in #74
• fix: fix key again by @tlambert03 in #77

New Contributors

• @veegalinova made their first contribution in #69

Full Changelog: v0.0.5...v0.0.6

v0.0.5

What's Changed

• fix: fixed typo (from 'placemen' to 'placement') by @federico-carrara in #57
• add init_forbid_extra in pydantic.mypy settings by @tlambert03 in #58
• Documentation for excitation and emission code + a bug fix. by @ashesh-0 in #59
• fix: fix cosem fetch by @tlambert03 in #65

New Contributors

• @federico-carrara made their first contribution in #57

Full Changelog: v0.0.4...v0.0.5

v0.0.4

What's Changed

• fix: fix for redhat by @tlambert03 in #56

Full Changelog: v0.0.3...v0.0.4

v0.0.3

What's Changed

• feat: allow loading optical configs from fpbase, general refactor of optical configs by @tlambert03 in #40
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #42
• refactor: remove DataArray, use xarray directly, vendor xarray_jax from deepmind/graphcast by @tlambert03 in #43
• Establish dimension conventions, pass dimensions through more explicitly by @tlambert03 in #44
• docs: Overview of various stages. by @tlambert03 in #46
• feat: add caching by @tlambert03 in #41
• feat: add ndview convenience by @tlambert03 in #49
• feat: add cosem models, downloading, caching, binning, and tests by @tlambert03 in #50
• ci: try self-hosted for cupy by @tlambert03 in #45
• build: pin numpy to <2 until next tensorstore release by @tlambert03 in #51
• feat: support multi-channel, multi-fluorophore simulations by @ashesh-0 in #35
• feat: pull neuron ground truths from allen brain by @tlambert03 in #48
• fix: remove caching on bins by @tlambert03 in #53
• feat: cosem Sample by @tlambert03 in #18

New Contributors

• @ashesh-0 made their first contribution in #35

Full Changelog: v0.0.2...v0.0.3

v0.0.2

What's Changed

• feat: swappable fft backends, including torch and jax by @tlambert03 in #30
• feat: add emission event example, and add lifetime to state from fpbase, test examples by @tlambert03 in #34
• feat: add direct from ground truth by @tlambert03 in #32
• feat: establish some general Annotated[..., Validator()] patterns. add Fluorophore.from_fpbase by @tlambert03 in #36
• feat: add pint quantities to more fields by @tlambert03 in #37
• fix cupy by @tlambert03 in #38

Full Changelog: v0.0.1...v0.0.2

v0.0.1

What's Changed

• use mypyc for bresenham by @tlambert03 in #6
• update precommit by @tlambert03 in #7
• Fix import and formatting issues in multiple files by @tlambert03 in #11
• ci(dependabot): bump softprops/action-gh-release from 1 to 2 by @dependabot in #13
• ci(dependabot): bump actions/setup-python from 4 to 5 by @dependabot in #14
• ci(dependabot): bump codecov/codecov-action from 3 to 4 by @dependabot in #15
• Reorganize code by @tlambert03 in #12
• Smaller psf by @tlambert03 in #16
• cosem and cleanup by @tlambert03 in #17
• feat: use SimBaseModel and add float precision setting by @tlambert03 in #19
• feat: cache psf by @tlambert03 in #26
• ci(pre-commit.ci): autoupdate by @pre-commit-ci in #24
• Update ci, prep for release to pypi by @tlambert03 in #27
• feat: higher level psf caching by @tlambert03 in #28

New Contributors

• @tlambert03 made their first contribution in #6
• @dependabot made their first contribution in #13
• @pre-commit-ci made their first contribution in #24

Full Changelog: https://github.com/tlambert03/microsim/commits/v0.0.1