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adapted protocols
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tklammsteiner committed Dec 20, 2023
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2 changes: 2 additions & 0 deletions README.md
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# Waste Management Lab Course (**718837 UE Biogas**)
#### Universität Innsbruck | Department of Microbiology

![](../../assets/img/titelbild.png)

## Find the current course details (dates and deadlines) at [uibk.ac.at](https://lfuonline.uibk.ac.at/public/lfuonline_lv.details?sem_id_in=23W&lvnr_id_in=718837&sprache_in=en) and [OLAT](https://lms.uibk.ac.at/url/RepositoryEntry/5478907904)


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22 changes: 22 additions & 0 deletions data/schedule.csv
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Week;Day;T1;T2;T3;T4;T5;T6;T7;T8;T9;T10;T11
Week 1;Monday;-;;;;;;;;;;
Week 1;Tuesday;-;;;;;;;;;;
Week 1;Wednesday;-;;;;;;;;;;
Week 1;Thursday;-;;;;;;;;;;
Week 1;Friday;Introductory test;Experiment planning;Treatment selection;Filling the reactors;Testing tightness;Pouring agar plates;;;;;
Week 1;Saturday;-;;;;;;;;;;
Week 1;Sunday;-;;;;;;;;;;
Week 2;Monday;Experiment start;PNF;pH;EC;FOS/TAC;DM d0 initial weight;PT plating;;;;
Week 2;Tuesday;GM;DM d0 end weight;oDM intial weight;CNP grinding;PT evaluation;;;;;;
Week 2;Wednesday;GM;PNF;ph;EC;FOS/TAC;TDM d2 initial weight;COD d0, d2;Create master plates;oDM end weight;;
Week 2;Thursday;;;;;;;;;;;
Week 2;Friday;;;;;;;;;;;
Week 2;Saturday;;;;;;;;;;;
Week 2;Sunday;;;;;;;;;;;
Week 3;Monday;;;;;;;;;;;
Week 3;Tuesday;;;;;;;;;;;
Week 3;Wednesday;;;;;;;;;;;
Week 3;Thursday;;;;;;;;;;;
Week 3;Friday;;;;;;;;;;;
Week 3;Saturday;;;;;;;;;;;
Week 3;Sunday;;;;;;;;;;;
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32 changes: 18 additions & 14 deletions docs/protocol_english/protocol_english.html
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<h2 id="toc-title">Inhalt</h2>

<ul>
<li><a href="#safety-in-the-lab" id="toc-safety-in-the-lab" class="nav-link active" data-scroll-target="#safety-in-the-lab">1. Safety in the lab</a>
<li><a href="#schedule" id="toc-schedule" class="nav-link active" data-scroll-target="#schedule">Schedule</a></li>
<li><a href="#safety-in-the-lab" id="toc-safety-in-the-lab" class="nav-link" data-scroll-target="#safety-in-the-lab">1. Safety in the lab</a>
<ul class="collapse">
<li><a href="#laboratory" id="toc-laboratory" class="nav-link" data-scroll-target="#laboratory">1.1. Laboratory</a></li>
<li><a href="#behaviour-in-the-lab" id="toc-behaviour-in-the-lab" class="nav-link" data-scroll-target="#behaviour-in-the-lab">1.2. Behaviour in the lab</a></li>
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<li>Cow in the Alps <a href="https://www.kleinezeitung.at">https://www.kleinezeitung.at</a></li>
</ul>
<p><br></p>
<p><strong>Abbreviations</strong>:</p>
<section id="schedule" class="level1">
<h1>Schedule</h1>
<p><br></p>
<table class="table">
<colgroup>
<col style="width: 23%">
<col style="width: 76%">
</colgroup>
<thead>
<tr class="header">
<th>Abkürzung</th>
<th>Erklärung</th>
<th>Abbreviation</th>
<th>Description</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>CNP</td>
<td>Probennahme für C/N-Analyse</td>
<td>Sampling for C/N-Analysis</td>
</tr>
<tr class="even">
<td>CSB</td>
<td>Chemischer Sauerstoffbedarf</td>
<td>Chemical oxygen demand</td>
</tr>
<tr class="odd">
<td>EC</td>
<td>elektrische Leitfähigkeit (Electrical Conductivity)</td>
<td>Electrical Conductivity</td>
</tr>
<tr class="even">
<td>FOS/TAC</td>
<td>Alkalinität (Verhältnis von organische Säuren zur Carbonat-Pufferkapazität)</td>
<td>Alkalinity (Ratio of organic acids to carbonate buffer capacity)</td>
</tr>
<tr class="odd">
<td>GM</td>
<td>Messung der Gasmenge und Gaszusammensetzung</td>
<td>Measuring amount and composition of gas</td>
</tr>
<tr class="even">
<td>PN/PNF</td>
<td>Probennahmen / Probennahme und Fütterung</td>
<td>Sampling / Sampling and feeding</td>
</tr>
<tr class="odd">
<td>PT</td>
<td>Pathogen Test mit Selektivagar-Platten</td>
<td>Pathogen test with selective media</td>
</tr>
<tr class="even">
<td>TS, oTS</td>
<td>Trockensubstanz, organische Trockensubstanz</td>
<td>Dry matter, organic dry matter</td>
</tr>
<tr class="odd">
<td>VFA</td>
<td>Flüchtige Fettsäuren (Volatile Fatty Acids)</td>
<td>Volatile Fatty Acids</td>
</tr>
<tr class="even">
<td>DNA Q&amp;S</td>
<td>DNA-Quantifizierung (Quantus) und Sanger Sequenzierung</td>
<td>DNA quantification (Quantus) and Sanger sequencing</td>
</tr>
</tbody>
</table>
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<li><p><strong>Abstract</strong>: The students prepare an extended abstract (two A4 pages), as is usual for conference participation or scientific publications. This should explain the experimental approach and present the most important results. Further information on writing a scientific abstract will be provided during the lab course. Ideally, it should be submitted by e-mail (to one of the course instructors), with the day of the debriefing set as the deadline.</p></li>
</ul>
<p><br></p>
</section>
<section id="safety-in-the-lab" class="level1">
<h1>1. Safety in the lab</h1>
<section id="laboratory" class="level2">
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<br>

**Abbreviations**:
# Schedule

| Abkürzung | Erklärung |
<br>

| Abbreviation | Description |
|-----------|------------------------------------|
| CNP | Probennahme für C/N-Analyse |
| CSB | Chemischer Sauerstoffbedarf |
| EC | elektrische Leitfähigkeit (Electrical Conductivity) |
| FOS/TAC | Alkalinität (Verhältnis von organische Säuren zur Carbonat-Pufferkapazität) |
| GM | Messung der Gasmenge und Gaszusammensetzung |
| PN/PNF | Probennahmen / Probennahme und Fütterung |
| PT | Pathogen Test mit Selektivagar-Platten |
| TS, oTS | Trockensubstanz, organische Trockensubstanz |
| VFA | Flüchtige Fettsäuren (Volatile Fatty Acids) |
| DNA Q&S | DNA-Quantifizierung (Quantus) und Sanger Sequenzierung |
| CNP | Sampling for C/N-Analysis |
| CSB | Chemical oxygen demand |
| EC | Electrical Conductivity |
| FOS/TAC | Alkalinity (Ratio of organic acids to carbonate buffer capacity) |
| GM | Measuring amount and composition of gas |
| PN/PNF | Sampling / Sampling and feeding |
| PT | Pathogen test with selective media |
| TS, oTS | Dry matter, organic dry matter |
| VFA | Volatile Fatty Acids |
| DNA Q&S | DNA quantification (Quantus) and Sanger sequencing |

**Objective**\
The aim of this lab course is to simulate biogas production on a laboratory scale and to learn methods for measuring important monitoring parameters. This involves adjusting various parameters and observing the effects on gas production and other important process parameters.
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Copyright (c) 2014-2017 Denis Pushkarev

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in
all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
THE SOFTWARE.
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{
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