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Pull requests: theiagen/public_health_bioinformatics

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Pull requests list

[PhyloValidate] Create phylogenetic comparison and validation workflow
#771 opened Mar 11, 2025 by xonq • Draft
16 tasks
[Pangolin] Update Pangolin image to 4.3.1-pdata-1.32 from 4.3.1-pdata-1.31
#769 opened Mar 10, 2025 by awh082834 Loading…
5 of 11 tasks
[Freyja] Add GFF flag and make primer_bed optional
#768 opened Mar 5, 2025 by awh082834 Loading…
9 of 11 tasks
1
1
[Standardization] Continue language standardization
#764 opened Feb 25, 2025 by sage-wright • Draft
11 tasks
[New Workflow] Adding Dorado_Basecalling_PHB
#756 opened Feb 12, 2025 by sage-wright Loading…
9 of 11 tasks
1
12
[Mercury] Expose additional inputs for column population
#755 opened Feb 10, 2025 by xonq Loading…
17 of 23 tasks
TheiaCoV Flu optimizations
#749 opened Feb 4, 2025 by kapsakcj • Draft
2 of 13 tasks
1
[New Workflow] AMR-search for neisseria gonorrhoeae samples
#743 opened Feb 3, 2025 by fraser-combe • Draft
4 of 11 tasks
11
[Artic] Large overhaul for newer versions supporting clair3
#715 opened Jan 8, 2025 by Michal-Babins • Draft
5 of 11 tasks
1
[New Workflow] Flye_denovo to replace DragonFlye
#692 opened Dec 13, 2024 by fraser-combe • Draft
4 of 11 tasks
3
@awh082834
40
[TheiaEuk] TheiaEuk ONT Workflow
#644 opened Oct 8, 2024 by Michal-Babins • Draft
10 tasks
1
@cimendes
2
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