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Add maximum accepted motif length to README #89

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Add maximum accepted motif length to README #89

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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -73,7 +73,7 @@ To run HipSTR in its most broadly applicable mode, run it on **all samples concu
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* **bams** : a comma-separated list of [BAM/CRAM](#bams) files generated by [BWA-MEM](http://bio-bwa.sourceforge.net/bwa.shtml) and sorted and indexed using [samtools](http://www.htslib.org/)
* **regions** : a [BED](#str-bed) file containing the coordinates for each STR region of interest. Download BED files for various organisms, including humans, from [here](https://github.com/HipSTR-Tool/HipSTR-references/)
* **regions** : a [BED](#str-bed) file containing the coordinates for each STR region of interest. Download BED files for various organisms, including humans, from [here](https://github.com/HipSTR-Tool/HipSTR-references/). NOTE: the maximum allowed period length is 9 bp.
* **fasta** : [FASTA file](https://en.wikipedia.org/wiki/FASTA_format) containing the sequence for each chromosome in the BED file. This build's coordinates must match those of the STR regions
* **str-vcf** : The output path for the STR genotypes

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