Fix pypi urls for bot autobump: setuptools changed some source paths (b…

…ioconda#49230) * Fix khipu_metabolomics pypi sdist path See bioconda#48971 * update version and sha * url fix * f url * f galaxy sequence utils * f galaxy sequence utils * f galaxy files * f jms * Run exports * fix version * fix pin name * Update requirements of khipu * fix pin * fix * Don't do galaxy-data on this branch * Fix khipu requirements
tcezard · Aug 20, 2024 · 4ee307c · 4ee307c
1 parent cd6c980
commit 4ee307c
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diff --git a/recipes/galaxy-files/meta.yaml b/recipes/galaxy-files/meta.yaml
@@ -1,13 +1,13 @@
-{% set version = "24.0.0" %}
-{% set sha256 = "d00dab002d94a6463bb93d6c7fab4d5dce921e7ab54de5ca59c615faa1a14038" %}
+{% set version = "24.1.1" %}
+{% set sha256 = "d3c23617eed928515fd492fd97588790b1c095fdd298b5f5584307f34846c4ca" %}
 {% set galaxy_version = version.split(".")[:2]|join(".") %}
 
 package:
  name: galaxy-files
  version: {{ version }}
 
 source:
- url: https://pypi.io/packages/source/g/galaxy-files/galaxy-files-{{ version }}.tar.gz
+ url: https://pypi.io/packages/source/g/galaxy-files/galaxy_files-{{ version }}.tar.gz
  sha256: {{ sha256 }}
 
 build:

diff --git a/recipes/galaxy-objectstore/meta.yaml b/recipes/galaxy-objectstore/meta.yaml
@@ -1,13 +1,13 @@
-{% set version = "24.0.0" %}
-{% set sha256 = "0cd30eff8285b83320b3eb5677bb93e3d368a8e771747c906861f88ca5036cd6" %}
+{% set version = "24.1.1" %}
+{% set sha256 = "0a38e7fedc5c9300507d441c17d745957e1c8a0c65d1b7efde62361bf024eff1" %}
 {% set galaxy_version = version.split(".")[:2]|join(".") %}
 
 package:
  name: galaxy-objectstore
  version: {{ version }}
 
 source:
- url: https://pypi.io/packages/source/g/galaxy-objectstore/galaxy-objectstore-{{ version }}.tar.gz
+ url: https://pypi.io/packages/source/g/galaxy-objectstore/galaxy_objectstore-{{ version }}.tar.gz
  sha256: {{ sha256 }}
 
 build:

diff --git a/recipes/galaxy_sequence_utils/meta.yaml b/recipes/galaxy_sequence_utils/meta.yaml
@@ -1,5 +1,6 @@
 {% set name = "galaxy_sequence_utils" %}
 {% set version = "1.1.5" %}
+{% set sha256 = "c32bd91f6ff11ad6e8b62f8de309d695ef5c33a782afbf5122c1db7144ef1162" %}
 
 package:
  name: {{ name|lower }}
@@ -12,13 +13,15 @@ about:
  summary: Sequence Utilities from the Galaxy project
 
 source:
- url: https://files.pythonhosted.org/packages/f9/f2/39a48c3cc1635e4086a743c80f782bb216f069316437028d909448c2356a/galaxy_sequence_utils-1.1.5.tar.gz
- sha256: c32bd91f6ff11ad6e8b62f8de309d695ef5c33a782afbf5122c1db7144ef1162
+ url: https://pypi.io/packages/source/g/galaxy-sequence-utils/galaxy_sequence_utils-{{ version }}.tar.gz
+ sha256: {{ sha256 }}
 
 build:
  noarch: python
- number: 0
+ number: 1
  preserve_egg_dir: True
+ run_exports:
+ -{{ pin_subpackage(name, max_pin="x") }}
  entry_points:
  - gx-fastq-to-tabular=galaxy_utils.sequence.scripts.fastq_to_tabular:main
  - gx-fastq-groomer=galaxy_utils.sequence.scripts.fastq_groomer:main

diff --git a/recipes/jms-metabolite-services/meta.yaml b/recipes/jms-metabolite-services/meta.yaml
@@ -1,20 +1,20 @@
 {% set name = "jms-metabolite-services" %}
-{% set version = "0.5.7" %}
+{% set version = "0.5.8" %}
 
 package:
  name: {{ name|lower }}
  version: {{ version }}
 
 source:
- url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/jms-metabolite-services-{{ version }}.tar.gz
- sha256: 39cad5a790ebd876ecce7f093769fb7495bbb44e74953c428d81055e5f7feac9
+ url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/jms_metabolite_services-{{ version }}.tar.gz
+ sha256: 0067d4804ebf10aed93556be6e2f7113173b9f5a50c36ea81ef6a2d0254772e7
 
 build:
  noarch: python
  script: {{ PYTHON }} -m pip install . -vv
  number: 0
  run_exports:
-  - {{ pin_subpackage('jms-metabolite-services', max_pin="x.x") }}
+ - {{ pin_subpackage('jms-metabolite-services', max_pin="x.x") }}
 
 
 requirements:

diff --git a/recipes/khipu-metabolomics/meta.yaml b/recipes/khipu-metabolomics/meta.yaml
@@ -1,33 +1,39 @@
 {% set name = "khipu-metabolomics" %}
-{% set version = "0.7.5" %}
+{% set version = "2.0.1" %}
 
 package:
  name: {{ name|lower }}
  version: {{ version }}
 
 source:
- url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/khipu-metabolomics-{{ version }}.tar.gz
- sha256: 5c89c28d30fccefb1e468d8fbcb3637bd452f002438291f7eb910a762ceb99f1
+ url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/khipu_metabolomics-{{ version }}.tar.gz
+ sha256: 98bc3a78ece5def5041506f3219b0a549b3eb95c05b75817d91eabf94f0810ac
 
 build:
- entry_points:
- - khipu=khipu.command_line:main
  noarch: python
  script: {{ PYTHON }} -m pip install . -vv
  number: 0
  run_exports:
  - {{ pin_subpackage('khipu-metabolomics', max_pin="x.x") }}
+ entry_points:
+ - khipu=khipu.command_line:main
 
 requirements:
  host:
  - python >=3.7
  - pip
  run:
  - python >=3.7
+ - intervaltree
+ - isocor
  - mass2chem
- - treelib
+ - matplotlib
+ - numpy
  - networkx
  - pandas
+ - requests
+ - scipy
+ - treelib
 test:
  imports:
  - khipu
@@ -36,6 +42,7 @@ test:
  - khipu --help
  requires:
  - pip
+ - requests
 
 about:
  home: https://github.com/shuzhao-li/khipu