Removed pbmc_facs. #149
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: macos-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install dependencies | |
| run: | | |
| update.packages("Matrix") | |
| install.packages(c("remotes","rcmdcheck")) | |
| install.packages(c("devtools","remotes","quadprog","gtools")) | |
| install.packages(c("irlba","Rtsne","uwot","dplyr","Rcpp")) | |
| install.packages(c("RcppArmadillo","RcppParallel","pbapply")) | |
| install.packages(c("progress","ggplot2","ggrepel","cowplot")) | |
| install.packages(c("plotly","htmlwidgets","testthat","Ternary")) | |
| install.packages("RhpcBLASctl") | |
| remotes::install_github("slowkow/ggrepel",upgrade="never",force=TRUE) | |
| remotes::install_github("stephens999/ashr",upgrade="never",force=TRUE) | |
| remotes::install_github("linxihui/NNLM",upgrade="never",force=TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| rcmdcheck::rcmdcheck(args = c("--no-manual","--ignore-vignettes"), | |
| error_on = "error",build_args = "--no-build-vignettes") | |
| shell: Rscript {0} | |