You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Option 2: (see Handle genes that are longer than max-LZ-region #51) Make LZ handle 3Mb regions by subsetting variants, and link bins to LZ. Either (a) make pheno1_pval_le_1e-2.tsv.gz for each pheno or (b) use a priorityqueue to get best 1000 variants for each LZ request. Either way grey-out the missing rectangle of the plot. Somehow make genes panel denser or prioritize genes (protein-coding, etc).
Option 3: record the position of the strongest pval for each bin, and link to that. (Nope.)
The text was updated successfully, but these errors were encountered:
Unfortunately, bins are 3Mb wide, but LZ doesn't currently handle more than 400kb.
Option 1: (see On Manhattan, improve peak selection and keep 500 variants union 500 peaks unbinned. #68) Improve peak selection to catch up to 1000 peaks better than 1e-6, and make all peaks clickable.
Option 2: (see Handle genes that are longer than max-LZ-region #51) Make LZ handle 3Mb regions by subsetting variants, and link bins to LZ. Either (a) make
pheno1_pval_le_1e-2.tsv.gz
for each pheno or (b) use a priorityqueue to get best 1000 variants for each LZ request. Either way grey-out the missing rectangle of the plot. Somehow make genes panel denser or prioritize genes (protein-coding, etc).Option 3: record the position of the strongest pval for each bin, and link to that. (Nope.)
The text was updated successfully, but these errors were encountered: