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lines changed Original file line number Diff line number Diff line change @@ -3,11 +3,21 @@ Process eQTL data into tsv format suitable for import using mongoimport.
33
44## Importing into mongo
55Data is in format that is suitable to use [ mongoimport] ( https://www.mongodb.com/docs/database-tools/mongoimport/ ) tool from MongoDB.
6+
67E.g. import consolidated conditional analysis into ` eqtl_cond ` collection.
78``` sh
89mongoimport \
910 --host=" localhost" --db=" bravo-demo" \
1011 --type=" tsv" --columnsHaveTypes --headerline \
1112 --parseGrace=stop --collection=eqtl_cond \
12- --file=result/conditional/all.cond.tsv
13+ --file=result/all.cond.tsv
14+ ```
15+
16+ E.g. import consolidated susie analysis into ` eqtl_cond ` collection.
17+ ``` sh
18+ mongoimport \
19+ --host=" localhost" --db=" bravo-demo" \
20+ --type=" tsv" --columnsHaveTypes --headerline \
21+ --parseGrace=stop --collection=eqtl_susie \
22+ --file=result/all.susie.tsv
1323```
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