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Pull requests: spinalcordtoolbox/spinalcordtoolbox

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Pull requests list

Use discs instead of labeled segmentation in sct_process_segmentation feature category: new functionality sct_process_segmentation context:
#4948 opened Jun 27, 2025 by sandrinebedard • Draft
6 tasks
7.1
1
@sandrinebedard
1
Update lesion_ms DeepSeg model from r20241101 to r20250626 (ESMRMB 2025) enhancement category: improves performance/results of an existing feature sct_deepseg context: Global entry point for all deep learning segmentation methods
#4945 opened Jun 26, 2025 by plbenveniste • Draft
4 tasks
7.1
6
Add spinal cord CSA quadrant measurements experimental PR (do not merge) Used for experimentation, feedback, and discussion feature category: new functionality sct_process_segmentation context:
#4943 opened Jun 25, 2025 by valosekj • Draft
4 tasks
3
Automatically reset the stable docs branch when creating a new release CI category: TravisCI, GitHub Actions, etc.
#4942 opened Jun 25, 2025 by joshuacwnewton Loading…
3 of 4 tasks
7.1
1
@joshuacwnewton
1
WIP: Debug cord morphometrics experimental PR (do not merge) Used for experimentation, feedback, and discussion
#4941 opened Jun 25, 2025 by valosekj • Draft
6
Address new DeprecationWarnings thrown during pytest test suite CI category: TravisCI, GitHub Actions, etc. tests context: unit, integration, or functional tests upstream Issue caused by software dependencies
#4940 opened Jun 23, 2025 by joshuacwnewton Loading…
3 of 4 tasks
7.1
@joshuacwnewton
1
Expand LazyLoader usage to improve import times across scripts enhancement category: improves performance/results of an existing feature
#4938 opened Jun 20, 2025 by joshuacwnewton Loading…
3 of 4 tasks
7.1
1
@joshuacwnewton
2
Validate $SCT_DIR for path-length issues (even for the default directory + non-interactive mode) installation category: install_sct or pip/setup.py
#4935 opened Jun 17, 2025 by joshuacwnewton Loading…
2 of 4 tasks
7.1
1
@joshuacwnewton
5
Implement "tissue bridge ratio" metrics feature category: new functionality sct_analyze_lesion context:
#4933 opened Jun 14, 2025 by valosekj • Draft
1 of 4 tasks
1
2
Prevent repeated slices during straightening by correctly zeroing out duplicate slices bug category: fixes an error in the code sct_register_to_template context: sct_straighten_spinalcord context:
#4932 opened Jun 13, 2025 by joshuacwnewton Loading…
2 of 4 tasks
7.1
2
@joshuacwnewton
8
Allow the use of custom mapping for sct_label_vertebrae enhancement category: improves performance/results of an existing feature
#4921 opened Jun 4, 2025 by NathanMolinier Loading…
1 of 4 tasks
@NathanMolinier
2
Improve moco for interleaved data enhancement category: improves performance/results of an existing feature sct_dmri_moco context:
#3172 opened Jan 14, 2021 by valosekj • Draft
2 tasks
1
1
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