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Pull requests: sourmash-bio/sourmash_plugin_branchwater

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Pull requests list

Bump zip from 4.2.0 to 4.3.0 dependencies Pull requests that update a dependency file rust Pull requests that update Rust code
#673 opened Jul 14, 2025 by dependabot bot Loading…
EXP: refactor fastgather to use CounterGather
#651 opened May 23, 2025 by ctb Loading…
8 of 13 tasks
2
WIP: add average_containment and cosine sim to pairwise and multisearch
#646 opened May 1, 2025 by bluegenes Loading…
WIP: add wheel building
#589 opened Jan 14, 2025 by ctb Loading…
1
EXP: try out lower level pyo3 API
#552 opened Dec 21, 2024 by ctb Loading…
1 task
WIP: gather directly from fasta
#532 opened Nov 21, 2024 by bluegenes Loading…
EXP: support running flamegraph code
#493 opened Nov 4, 2024 by ctb Loading…
1
EXP: try bincode
#455 opened Sep 12, 2024 by bluegenes Loading…
WIP: debug multisigfile test
#445 opened Aug 27, 2024 by ctb Loading…
10
WIP: add sig cat utility
#394 opened Jul 18, 2024 by bluegenes Loading…
13 tasks
2
EXP: use py check_signals() to catch CTRL-C
#387 opened Jul 12, 2024 by ctb Loading…
1
1
WIP: check pairwise vs sourmash compare output
#366 opened Jun 20, 2024 by ctb Loading…
3 tasks
Enable listing of zip files in fromfiles for index, gather, search
#354 opened Jun 13, 2024 by olgabot Loading…
1
27
WIP: use KmerMinHashBTree for hash subtraction
#310 opened Apr 23, 2024 by bluegenes Loading…
WIP: optionally output graph in pajek format
#293 opened Mar 29, 2024 by bluegenes Loading…
2
WIP: fail-exit when zipfile cannot load in multisearch (and others)
#281 opened Mar 19, 2024 by ctb Loading…
1
WIP: improve/extend thread management and ctrl-c
#276 opened Mar 18, 2024 by bluegenes • Draft
1
WIP: add Ctrl-C interrupt
#253 opened Feb 28, 2024 by bluegenes Loading…
2
EXP: Show multisig loading issue
#202 opened Feb 2, 2024 by bluegenes Loading…
WIP: Add scripts/pairwise_to_matrix/ helper script
#198 opened Jan 27, 2024 by mr-eyes Loading…
4
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