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1,101 Open 724 Closed
1,101 Open 724 Closed
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Issues list

Do not overwrite parameters when using module with with directive enhancement New feature or request
#3338 opened Mar 6, 2025 by LKress
@johausmann @LKress @SrPeter128
Use container directive for wrappers enhancement New feature or request
#3337 opened Mar 6, 2025 by LKress
@johausmann @LKress @SrPeter128
Any way to get command line settings in snakefile enhancement New feature or request
#3336 opened Mar 6, 2025 by karlestira
DAG resolution debugger enhancement New feature or request
#3332 opened Mar 4, 2025 by bsmith89
@cademirch
Strict DAG-building mode to help with debugging enhancement New feature or request
#3331 opened Mar 4, 2025 by bsmith89
allow for directly launching a run, if a --dryrun looked good, without restarting DAG building enhancement New feature or request
#3330 opened Mar 4, 2025 by dlaehnemann
@WardDeb
2
feat: Snakemake grammar and parser enhancement New feature or request help wanted Extra attention is needed
#3329 opened Mar 3, 2025 by cademirch
5
docs: API Documentation and Examples
#3328 opened Mar 3, 2025 by cademirch
spack plugin (using new snakemake-interface-software-deployment-plugins) enhancement New feature or request hackathon-2025
#3327 opened Mar 3, 2025 by johanneskoester
CVMFS plugin (using new snakemake-interface-software-deployment-plugins) enhancement New feature or request hackathon-2025
#3326 opened Mar 3, 2025 by johanneskoester
@imallona
container plugin (using new snakemake-interface-software-deployment-plugins) enhancement New feature or request
#3325 opened Mar 3, 2025 by johanneskoester
envmodules plugin (using new snakemake-interface-software-deployment-plugins) enhancement New feature or request
#3324 opened Mar 3, 2025 by johanneskoester
@johanneskoester
nix plugin (using new snakemake-interface-software-deployment-plugins) enhancement New feature or request
#3323 opened Mar 3, 2025 by johanneskoester
feat: improve DAG visualization in HTML report enhancement New feature or request
#3322 opened Feb 28, 2025 by dlaehnemann
chore: update all the GitHub Actions versions across all of the organization's repos
#3321 opened Feb 28, 2025 by dlaehnemann
@dlaehnemann
docs: create a walkthrough for standardized workflow development documentation Improvements or additions to documentation
#3320 opened Feb 28, 2025 by dlaehnemann
document snakemake --report report.zip functionality
#3319 opened Feb 28, 2025 by dlaehnemann
@dlaehnemann
Wildcards should not start with special characters enhancement New feature or request question Further information is requested
#3318 opened Feb 28, 2025 by cmeesters
2
Jinja templated bash script enhancement New feature or request
#3316 opened Feb 27, 2025 by lutrarutra
10
Snakemake kubernetes and TypeError bug Something isn't working
#3308 opened Feb 21, 2025 by ThatRand0meR
5
--keep-going ignored by MissingInputException bug Something isn't working
#3306 opened Feb 20, 2025 by jorgenriseth
Request for Sample-Level Priority Setting in Snakemake
#3305 opened Feb 20, 2025 by xdgene
Report html pages generated in checkpoint jobs are not included in the report. bug Something isn't working
#3301 opened Feb 17, 2025 by weizhu365
snakemake cannot validate JSON schema 2020-12 bug Something isn't working
#3299 opened Feb 17, 2025 by irm-codebase
1
Unescaped quotes in generated bash shell script bug Something isn't working
#3297 opened Feb 17, 2025 by prs513rosewood
1
4
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