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Dry-run crashes with KeyError when a checkpoint-driven grouped job is present

Status: Open.

#4202 In snakemake/snakemake;

· alessandrogentili001 opened on May 25, 2026

Question about modular design

bugSomething isn't workingSomething isn't working

Status: Open.

#4201 In snakemake/snakemake;

· jmzhang1911 opened on May 23, 2026

Skills for claude code

enhancementNew feature or requestNew feature or request

Status: Open.

#4198 In snakemake/snakemake;

· fgypas opened on May 20, 2026

Wildcard constraints applied before pathvar expansion

bugSomething isn't workingSomething isn't working

Status: Open.

#4197 In snakemake/snakemake;

· malthesr opened on May 20, 2026

Add support for marimo notebooks

enhancementNew feature or requestNew feature or request

Status: Open.

#4195 In snakemake/snakemake;

· HealthyPear opened on May 19, 2026

workdir directive no longer affects .snakemake log directory placement when placed inside snakefile (regression from 9.9.0)

bugSomething isn't workingSomething isn't working

Status: Open.

#4188 In snakemake/snakemake;

· gregdev00 opened on May 7, 2026

New directive metarule to composable sub-DAG units with explicit I/O interfaces

enhancementNew feature or requestNew feature or request

Status: Open.

#4187 In snakemake/snakemake;

· Hocnonsense opened on May 7, 2026

Live docs use outdated sphinxawesome theme

bugSomething isn't workingSomething isn't working

Status: Open.

#4176 In snakemake/snakemake;

· Iain-S opened on Apr 30, 2026

docs: Rule combining conda and wrapper directives – is this redundant?

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#4175 In snakemake/snakemake;

· Sherry520 opened on Apr 30, 2026

Use of ancient keyword has unexpected results in unrelated rules

bugSomething isn't workingSomething isn't working

Status: Open.

#4166 In snakemake/snakemake;

· lukavom opened on Apr 23, 2026

Add support for external Perl scripts

enhancementNew feature or requestNew feature or request

Status: Open.

#4162 In snakemake/snakemake;

· b-brankovics opened on Apr 21, 2026

Benchmark directive produces NA for all metrics on Windows (AttributeError on meminfo.pss)

bugSomething isn't workingSomething isn't working

Status: Open.

#4159 In snakemake/snakemake;

· PatrikMrnka opened on Apr 19, 2026