snakemake wrapper sortmerna error #4403
Description
Hi I am using snakemake wrapper sortmerna. I am getting here this error;
Building DAG of jobs...
WorkflowError:
Failed to open environment file https://bitbucket.org/snakemake/snakemake-wrappers/raw/master/bio/sortmerna/environment.yaml:
HTTPError: HTTP Error 404: Not Found
Could you please look into it; this is my snake file code;
# Sample list
samples = ["PRG20C01", "PRG20C02"]
# Rule to trigger everything
rule all:
input:
expand("aligned_{sample}_1.fastq.gz", sample=samples),
expand("aligned_{sample}_2.fastq.gz", sample=samples),
expand("unpaired_{sample}_1.fastq.gz", sample=samples),
expand("unpaired_{sample}_2.fastq.gz", sample=samples),
expand("sortmerna_pe_stats_{sample}.log", sample=samples),
expand("logs/sortmerna/reads_pe_{sample}.log", sample=samples)
# Main rule
rule sortmerna_pe:
input:
ref = lambda wildcards: [f"{db}" for db in config['ref_files']],
reads = lambda wildcards: [f"{wildcards.sample}_{pair}.fq.gz" for pair in ['1', '2']],
output:
aligned = ["aligned_{sample}_1.fastq.gz", "aligned_{sample}_2.fastq.gz"],
other = ["unpaired_{sample}_1.fastq.gz", "unpaired_{sample}_2.fastq.gz"],
stats = "sortmerna_pe_stats_{sample}.log",
params:
extra = "--idx-dir idx --paired_in --out2",
threads: 16,
resources:
mem_mb = 3072,
log:
"logs/sortmerna/reads_pe_{sample}.log",
wrapper:
"master/bio/sortmerna"
Many thanks,