snakemake-wrapper-utils v0.6.2

Bug Fixes

• bug where mem_mb is never read (#34) (be7b4b2)

snakemake-wrapper-utils v0.6.1

Bug Fixes

• set default memory for get_mem() to 1/5 of 1GB (#32) (999240e)

snakemake-wrapper-utils v0.6.0

Features

• allow to configure the param name parsed by get_samtools_opts (#30) (84aa151)

Bug Fixes

• fix bug when short arguments are contained in long arguments (#28) (6b9b6db)

snakemake-wrapper-utils v0.5.3

Bug Fixes

• check for input: index="", when input: regions="" is specified, as the --regions-file option requires an index (#26) (7e11735)

snakemake-wrapper-utils v0.5.2

Bug Fixes

• introduce default 20% deduction from resources.mem_mb and override via params.java_mem_overhead_mv (#24) (71403bd)

snakemake-wrapper-utils v0.5.1

Bug Fixes

• typo when checking for regions file in params.extra (#22) (fa70493)

snakemake-wrapper-utils v0.5.0

Features

• Adding parsing of reference (#20) (5c259f5)
• Regions, samples and targets in get_bcftools_opts (#19) (e916c8b)

snakemake-wrapper-utils v0.4.1

Bug Fixes

• fixed missing return values (#15) (c6f0fa7)
• rename argument in function 'infer_out_format' (#17) (93d25fa)

snakemake-wrapper-utils v0.4.0

Features

• function for output format inference and disable temp folder (#13) (9b88bdd)

snakemake-wrapper-utils v0.3.1

Bug Fixes

• migrate publishing to release please (60a2665)