chore(master): release 2.0.0

[mbhall88]

🤖 I have created a release beep boop

2.0.0 (2026-05-22)

⚠ BREAKING CHANGES

• shell blocks in rules are now formatted by shfmt by default. Existing Snakefiles may see whitespace and structure changes in their shell directives. Use --no-format-shell or format_shell = false in pyproject.toml to opt out.

Features

• format shell directives using shfmt (#295) (a8d131b)

---

This PR was generated with Release Please. See documentation.

[coderabbitai]

Important

Review skipped

Review was skipped due to path filters

⛔ Files ignored due to path filters (2)

• CHANGELOG.md is excluded by !CHANGELOG.md
• pyproject.toml is excluded by !pyproject.toml

CodeRabbit blocks several paths by default. You can override this behavior by explicitly including those paths in the path filters. For example, including **/dist/** will override the default block on the dist directory, by removing the pattern from both the lists.

⚙️ Run configuration

Configuration used: Organization UI

Review profile: CHILL

Plan: Pro

Run ID: 6d7ce84c-5558-4c1d-8e28-41ee714ffae9

You can disable this status message by setting the reviews.review_status to false in the CodeRabbit configuration file.

Use the checkbox below for a quick retry:

• 🔍 Trigger review

✨ Finishing Touches

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch release-please--branches--master

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 96.59%. Comparing base (c4e8ad6) to head (6ffe231).

Additional details and impacted files

@@           Coverage Diff           @@
##           master     #297   +/-   ##
=======================================
  Coverage   96.59%   96.59%           
=======================================
  Files          13       13           
  Lines        1617     1617           
  Branches      324      324           
=======================================
  Hits         1562     1562           
  Misses         25       25           
  Partials       30       30           

Flag	Coverage Δ
unittests	96.53% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[mbhall88]

🤖 Created releases:

• v2.0.0

🌻