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TileDB-SOMA 1.5.0
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@johnkerl johnkerl released this 07 Nov 18:09
· 22 commits to release-1.5 since this release
1.5.0
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New features added

  • [python] Blockwise SciPy sparse and Arrow Table iterator (#1792) (#1858)
  • [python] Outgest uns (#1770) (#1801)
  • [python] Handle string columns with all-NaN values (#1834) (#1859)
  • [python] Support default-coord reads of corner-written dense ND arrays (#1810) (#1812)
  • [python] Allow uns-key restriction for ingest and outgest (#1815) (#1826)
  • [python] Allow X_layer_name=None for outgest of X-free experiments (#1830) (#1832)
  • [r] Write string attrs as UTF-8 (Python compatibility) (#1843) (#1850)

Minor changes

  • [r] Set the package version to 1.5.0, and update NEWS.md (#1856) (#1860)
  • [r] Unit-test queryability of enumerated columns (#1884) (#1885)
  • [r] Depend on TileDB-R 0.21.3 (#1882) (#1883)
  • [r] Install required tiledb package version from r-universe (#1863) (#1881)
  • [r] Suppress deprecation warnings in write_soma.DataFrame() (#1876) (#1878)
  • [r] Force exporting v3 assays with SeuratObject v5 installed (#1809) (#1841)
  • [ci/r] No more "Last 13 lines of output:" in CI (#1871) (#1873)
  • [ci/python] Make Python blockwise tests less resource-intensive (#1877) (#1879)
  • [ci/python] Excess pytest duration (#1866) (#1868)
  • [c++/python] Depend on core 2.17.3 and TileDB-Py 0.23.2 (#1838) (#1842)
  • [c++] Remove spdlog requirement (#1852) (#1857)
  • [c++/python] Expose uri, result_order, and column_names for SOMAArray (#1814) (#1827)
  • [c++/python/r] Depend on core 2.17.4, tiledb-py 0.23.4, and tiledb-r 0.21.2 (#1854) (#1855)

Bug fixes

  • [python] Enumerations-API refinement (#1755) (#1844)
  • [python] Non-default measurement propagation on from_anndata (#1820) (#1821)
  • [python/c++] Support enumerations with Pandas 2.0+
  • [python/c++] Expanded enumeration support in ArrowAdapter::to_arrow (#1848) (#1861)
  • [ci/python] Enable more verbose python unit test logging (#1870) (#1872)
  • [r] Update SOMADataFrame creation and writes (#1835) (#1847)
  • [c++] Correct results_complete (#1816) (#1831)
  • [ci/c++] Avoid intermittent CI fail building catch2 (#1828) (#1833)
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