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[r] [WIP] Remove tiledb-r as a dependency from tiledbsoma-r #3644

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@mojaveazure mojaveazure commented Jan 30, 2025

Remove the dependency of tiledb-r from tiledbsoma-r

SC-62760

resolves #2406

@mojaveazure mojaveazure force-pushed the paulhoffman/sc-62760/remove-tiledb-r-as-a-dependency-from-tiledbsoma branch 2 times, most recently from 6c9ff80 to 7dad1d7 Compare February 7, 2025 16:29
mojaveazure and others added 5 commits February 12, 2025 15:52
* [r] Remove `arrow_*_from_tiledb_*()` Helpers
Remove the following arrow <> tiledb-r helpers as they are unused and to
start removing tiledb-r from the code/tests

 - `arrow_field_from_tiledb_dim()`
 - `arrow_field_from_tiledb_attr()`
 - `arrow_schema_from_tiledb_schema()`

[SC-62761](https://app.shortcut.com/tiledb-inc/story/62761)
Replace calls to `tiledb::tiledb_object_type()` with
`get_tiledb_object_type()`

[SC-62778](https://app.shortcut.com/tiledb-inc/story/62778)
* [r] Remove calls to `tiledb::tiledb_version()`
Replace calls to `tiledb::tiledb_version()` with new helper function
`get_tiledb_version()`; `get_tiledb_version()` wraps
`tiledb_embedded_version()`, but adds a parameter `compact` to replicate
the `compact = TRUE` mode of `tiledb::tiledb_version()`

Also add names to `get_tiledb_version(compact = FALSE)`

[SC-62779](https://app.shortcut.com/tiledb-inc/story/62779)
Remove an unused custom class as part of replacing `TileDBObject` with a
new SOMA base-object class that is not reliant on tiledb-r

[SC-63206](https://app.shortcut.com/tiledb-inc/story/63206)

continues work for #2406
@mojaveazure mojaveazure force-pushed the paulhoffman/sc-62760/remove-tiledb-r-as-a-dependency-from-tiledbsoma branch from 35f0038 to e616a0d Compare February 12, 2025 20:52
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[r] Replace tiledb-r with libtiledbsoma in the R API (parent task)
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