[python] More readthedocs fixes for spatial (#3612)

* temp * pip install spatial too * down-pin dask
single-cell-data · Jan 22, 2025 · 4a17301 · 4a17301
1 parent 662293e
commit 4a17301
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Showing 5 changed files with 3 additions and 4 deletions.
diff --git a/apis/python/src/tiledbsoma/common.h b/apis/python/src/tiledbsoma/common.h
@@ -1,4 +1,5 @@
 #include <exception>
+#include <span>
 
 #include <pybind11/numpy.h>
 #include <pybind11/pybind11.h>

diff --git a/doc/build.sh b/doc/build.sh
@@ -65,7 +65,7 @@ fi
 if [ -n "$reinstall" ] || [ -n "$made_venv" ]; then
   pip install -r doc/requirements_doc.txt || die "could not install doc dependencies"
   pushd "$ext_dir"
-  pip install -e . || die "could not install tiledbsoma-py"
+  pip install -e '.[spatial]' || die "could not install tiledbsoma-py"
   popd
 fi
 

diff --git a/doc/requirements_doc.txt b/doc/requirements_doc.txt
@@ -1,5 +1,6 @@
 breathe==4.35.0
 cmake==3.29.2
+dask==2024.9.0
 docutils==0.20.1
 ipython==8.24.0
 jinja2==3.1.5

diff --git a/doc/source/python-tiledbsoma-dataframe.rst b/doc/source/python-tiledbsoma-dataframe.rst
@@ -43,8 +43,6 @@
       ~DataFrame.index_column_names
 
       ~DataFrame.count
-      ~DataFrame.shape
-      ~DataFrame.maxshape
       ~DataFrame.domain
       ~DataFrame.maxdomain
       ~DataFrame.tiledbsoma_has_upgraded_domain

diff --git a/doc/source/python-tiledbsoma-densendarray.rst b/doc/source/python-tiledbsoma-densendarray.rst
@@ -38,7 +38,6 @@
       ~DenseNDArray.is_sparse
 
       ~DenseNDArray.ndim
-      ~DenseNDArray.nnz
       ~DenseNDArray.shape
       ~DenseNDArray.maxshape
       ~DenseNDArray.tiledbsoma_has_upgraded_shape