SeqKit v2.10.1

Changes

• SeqKit v2.10.1 - 2025-08-19
  • seqkit seq:
    • fix validating sequences: it failed to report an error when the invalid sequence is not the last one in the input. #536
  • seqkit stats:
    • fix decimal places of some fields when using -T.
  • seqkit fx2tab:
    • fix the calculation of GC content (--gc). Previously, the denominator was the total sequence length, which could lead to inaccuracies due to the potential presence of gaps in the sequence. #515
  • seqkit sample:
    • fix -n for in-memory mode. #518
  • seqkit subseq:
    • fix the bug that subseq --feature is not case insensitive. #523
  • seqkit grep/locate/mutate:
    • update help message for -p/--pattern, to show how to set multiple values. #527 by @corneliusroemer

Links

OS	Arch	File, 中国镜像	Download Count
Linux	32-bit	seqkit_linux_386.tar.gz, 中国镜像
Linux	64-bit	seqkit_linux_amd64.tar.gz, 中国镜像
Linux	arm64	seqkit_linux_arm64.tar.gz, 中国镜像
macOS	64-bit	seqkit_darwin_amd64.tar.gz, 中国镜像
macOS	arm64	seqkit_darwin_arm64.tar.gz, 中国镜像
Windows	32-bit	seqkit_windows_386.exe.tar.gz, 中国镜像
Windows	64-bit	seqkit_windows_amd64.exe.tar.gz, 中国镜像

Notes

• please open an issue to request binaries for other platforms.
• run seqkit version to check update !!!
• run seqkit genautocomplete to update shell autocompletion script !!!

Please cite

Wei Shen*, Botond Sipos, and Liuyang Zhao. 2024. SeqKit2: A Swiss Army Knife for Sequence and Alignment Processing. iMeta e191. doi:10.1002/imt2.191.