Scripts related to the S5 project in the Van Bael lab.
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As of 2022-12-15, in press with Frontiers in Soil Science.
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Titled, "Decay of oil residues in the soil is enhanced by the presence of Spartina alterniflora, with no additional effects from microbiome manipulation"
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Raw Data is available via GRIIDC under the data set UDI: R5x2860000002
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Semiprocessed data for running these scripts can be found at https://github.com/sformel/S5/tree/master/Relevant%20Data
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Figure 1: Relative abundance of PAHs Script
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Figure 2: Plant Biomass Script
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Figure 3: Live Stem Count Script
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Figure 4: Prokaryote Composition in Soil Script
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Figure 5: Fungal Composition in Soil Script
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Figure 6: Fungal Composition in Roots Script
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Figure 7: Fungal Composition in Leaves Script
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Supplementary Figure 1: Site Map Script
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Supplementary Figure 2: Meoscosm Design
- Made in Adobe Illustrator, no relevenant code.
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Supplementary Figure 3: Nodes per Stem Script
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Supplementary Figure 4: Shannon Diversity of Prokaryote Soil Communities Script
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Supplementary Figure 5: Composition of Phyla in Prokaryote Soil Communities Script
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Supplementary Figure 6: Shannon Diversity of Fungal Communities Script
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Supplementary Figure 7: Composition of Phyla in Fungal Soil Communities Script
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Supplementary Figure 8: Composition of Phyla in Fungal Root Communities Script
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Supplementary Figure 8: Composition of Phyla in Fungal Leaf Communities Script
