Merge pull request #63 from seqeralabs/0.5.0_release

Add maxForks setting for Seqera CLI to overcome API issues
seqeralabs · Oct 23, 2024 · e85cb21 · e85cb21
2 parents 3ca08ce + 2875b2b
commit e85cb21
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Showing 5 changed files with 20 additions and 3 deletions.
diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml
@@ -84,7 +84,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install nf-core
+          pip install git+https://github.com/nf-core/[email protected]
 
       - name: Run nf-core lint
         env:

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,22 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [[0.5.0](https://github.com/seqeralabs/nf-aggregate/releases/tag/0.5.0)] - 2024-10-24
+
+### Credits
+
+Special thanks to the following for their contributions to the release:
+
+- [Adam Talbot](https://github.com/adamrtalbot)
+- [Rob Syme](https://github.com/robsyme)
+
+Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form.
+
+### Enhancements & fixes
+
+[PR #61](https://github.com/seqeralabs/nf-aggregate/pull/61) - Remove dependency on external library/grape
+[PR #63](https://github.com/seqeralabs/nf-aggregate/pull/63) - Add `maxForks` setting for Seqera CLI to overcome API issues
+
 ## [[0.4.0](https://github.com/seqeralabs/nf-aggregate/releases/tag/0.4.0)] - 2024-07-26
 
 ### Credits

diff --git a/modules/local/seqera_runs_dump/nextflow.config b/modules/local/seqera_runs_dump/nextflow.config
@@ -1,5 +1,6 @@
 process {
     withName: 'SEQERA_RUNS_DUMP' {
+        maxForks = 5
         ext.args = { params.seqera_cli_extra_args ? params.seqera_cli_extra_args.split("\\s(?=--)") : '' }
         ext.args2 = { params.skip_run_gantt ? '' : '--add-task-logs' }
         containerOptions = { params.java_truststore_path ? "--volume ${params.java_truststore_path}:${params.java_truststore_path}" : '' }

diff --git a/modules/local/seqera_runs_dump/tests/main.nf.test.snap b/modules/local/seqera_runs_dump/tests/main.nf.test.snap
@@ -2,7 +2,7 @@
     "Should run without failures": {
         "content": [
             [
-                "service-info.json:md5,72586e82ad2064d1a90008c7956d80d8",
+                "service-info.json:md5,6988ae3ef3c822007075726ecc73ba9c",
                 "workflow-load.json:md5,4f02d5a24ab89aa648cd4346785c8f2c",
                 "workflow-metadata.json:md5,b37b4faeddf283a2c44cbe4000e4ab6e",
                 "workflow-metrics.json:md5,13a5b5d7447fad4a8baa053d1abf85e5",

diff --git a/nextflow.config b/nextflow.config
@@ -222,6 +222,6 @@ manifest {
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.10.0'
     defaultBranch   = 'main'
-    version         = '0.4.0'
+    version         = '0.5.0'
     doi             = ''
 }