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Improve compatibility of cell segmentation output formats with downstream analysis tools

Status: Open.

#1026 In scverse/spatialdata;

· asmlgkj opened on Nov 24, 2025

Merging multiple samples into a single SpatialData object + single merged table

Status: Open.

#1025 In scverse/spatialdata;

· Rafael-Silva-Oliveira opened on Nov 21, 2025

Writing multiscale element to disk fails when configuring Dask to uses "processes"

Status: Open.

#1024 In scverse/spatialdata;

· ArneDefauw opened on Nov 20, 2025

Writing results of polygon query as Zarr

Status: Open.

#1023 In scverse/spatialdata;

· SFD5311 opened on Nov 19, 2025

<code>len</code> of points (used in <code>sdata.__repr__</code>) is broken after dask unpin

Status: Open.

#1022 In scverse/spatialdata;

· LucaMarconato opened on Nov 15, 2025

Image models fail with the latest <code>multiscale-spatial-image</code> release

Status: Open.

#1020 In scverse/spatialdata;

· LucaMarconato opened on Nov 15, 2025

Don't use empty <code>asserts</code>

Status: Open.

#1019 In scverse/spatialdata;

· timtreis opened on Nov 15, 2025

Use scverse template

maint 🏗️

Status: Open.

Task

#1018 In scverse/spatialdata;

· Zethson opened on Nov 14, 2025

polygon_query returns only rectangles

Status: Open.

#1017 In scverse/spatialdata;

· MathysHub opened on Nov 10, 2025

<code>pip install "spatialdata[extra]"</code> not working with Python 3.11

Status: Open.

#1016 In scverse/spatialdata;

· LucaMarconato opened on Nov 7, 2025

Can not import the package using jupyter notebook in Visual Studio Code

Status: Open.

#1014 In scverse/spatialdata;

· amina2500 opened on Nov 5, 2025

Reading and writing issues on Mac with external disk

Status: Open.

#1013 In scverse/spatialdata;

· LouisK92 opened on Nov 4, 2025