Add missing link targets

docs/api/classes.md

@@ -1,19 +1,16 @@
 ## Classes
 
 
-```{eval-rst}
-.. currentmodule:: scanpy
+```{currentmodule} scanpy
 ```
 
 {class}`~anndata.AnnData` is reexported from {mod}`anndata`.
 
 Represent data as a neighborhood structure, usually a knn graph.
 
-```{eval-rst}
-.. autosummary::
-   :nosignatures:
-   :toctree: ../generated/
-
-   Neighbors
+```{autosummary}
+:nosignatures:
+:toctree: ../generated/
 
+Neighbors
 ```

docs/api/datasets.md

@@ -1,27 +1,23 @@
 ## Datasets
 
-```{eval-rst}
-.. module:: scanpy.datasets
+```{module} scanpy.datasets
 ```
 
-```{eval-rst}
-.. currentmodule:: scanpy
+```{currentmodule} scanpy
 ```
 
-```{eval-rst}
-.. autosummary::
-   :nosignatures:
-   :toctree: ../generated/
-
-   datasets.blobs
-   datasets.ebi_expression_atlas
-   datasets.krumsiek11
-   datasets.moignard15
-   datasets.pbmc3k
-   datasets.pbmc3k_processed
-   datasets.pbmc68k_reduced
-   datasets.paul15
-   datasets.toggleswitch
-   datasets.visium_sge
+```{autosummary}
+:nosignatures:
+:toctree: ../generated/
 
+datasets.blobs
+datasets.ebi_expression_atlas
+datasets.krumsiek11
+datasets.moignard15
+datasets.pbmc3k
+datasets.pbmc3k_processed
+datasets.pbmc68k_reduced
+datasets.paul15
+datasets.toggleswitch
+datasets.visium_sge
 ```

docs/api/deprecated.md

@@ -1,14 +1,12 @@
 ## Deprecated functions
 
-```{eval-rst}
-.. currentmodule:: scanpy
+```{currentmodule} scanpy
 ```
 
-```{eval-rst}
-.. autosummary::
-   :nosignatures:
-   :toctree: ../generated/
+```{autosummary}
+:nosignatures:
+:toctree: ../generated/
 
-   pp.filter_genes_dispersion
-   pp.normalize_per_cell
+pp.filter_genes_dispersion
+pp.normalize_per_cell
 ```

docs/api/experimental.md

@@ -2,26 +2,27 @@
 
 ## Experimental
 
-```{eval-rst}
-.. module:: scanpy.experimental
-.. currentmodule:: scanpy
+```{module} scanpy.experimental
+```
+
+```{currentmodule} scanpy
 ```
 
 New methods that are in early development which are not (yet)
 integrated in Scanpy core.
 
-```{eval-rst}
-.. module:: scanpy.experimental.pp
-.. currentmodule:: scanpy
+```{module} scanpy.experimental.pp
+```
+
+```{currentmodule} scanpy
 ```
 
-```{eval-rst}
-.. autosummary::
-   :nosignatures:
-   :toctree: ../generated/
+```{autosummary}
+:nosignatures:
+:toctree: ../generated/
 
-   experimental.pp.normalize_pearson_residuals
-   experimental.pp.normalize_pearson_residuals_pca
-   experimental.pp.highly_variable_genes
-   experimental.pp.recipe_pearson_residuals
+experimental.pp.normalize_pearson_residuals
+experimental.pp.normalize_pearson_residuals_pca
+experimental.pp.highly_variable_genes
+experimental.pp.recipe_pearson_residuals
 ```

docs/api/get.md

@@ -1,23 +1,19 @@
 ## Get object from `AnnData`: `get`
 
-```{eval-rst}
-.. module:: scanpy.get
+```{module} scanpy.get
 ```
 
-```{eval-rst}
-.. currentmodule:: scanpy
+```{currentmodule} scanpy
 ```
 
 The module `sc.get` provides convenience functions for getting values back in
 useful formats.
 
-```{eval-rst}
-.. autosummary::
-   :nosignatures:
-   :toctree: ../generated/
-
-   get.obs_df
-   get.var_df
-   get.rank_genes_groups_df
+```{autosummary}
+:nosignatures:
+:toctree: ../generated/
 
+get.obs_df
+get.var_df
+get.rank_genes_groups_df
 ```

docs/api/metrics.md

@@ -1,22 +1,18 @@
 ## Metrics
 
-```{eval-rst}
-.. module:: scanpy.metrics
+```{module} scanpy.metrics
 ```
 
-```{eval-rst}
-.. currentmodule:: scanpy
+```{currentmodule} scanpy
 ```
 
 Collections of useful measurements for evaluating results.
 
-```{eval-rst}
-.. autosummary::
-   :nosignatures:
-   :toctree: ../generated/
-
-   metrics.confusion_matrix
-   metrics.gearys_c
-   metrics.morans_i
+```{autosummary}
+:nosignatures:
+:toctree: ../generated/
 
+metrics.confusion_matrix
+metrics.gearys_c
+metrics.morans_i
 ```