ENH: Bump scilpy to version 1.5.0 and upgrade dependencies

Bump `scilpy` to version 1.5.0 and upgrade dependencies accordingly.

Require the `scilpy`-patched `dipy` version to avoid package
compatibility issues.

Remove the dependencies force-upgrade in the package testing workflow,
as the versions required by `scilpy` are now modern enough to avoid the
primary issues they intended to fix.

Fix the BLAS option warning in `numpy` triggered by `python-spams` when
using an earlier version of `numpy`. Fixes:
```
AttributeError: module 'numpy.__config__' has no attribute 'blas_opt_info'

ERROR: Failed building wheel for python-spams
```

reported in:
https://github.com/scil-vital/tractolearn/actions/runs/4901866945/jobs/8753373506#step:5:945

.github/workflows/test_package.yml

@@ -53,16 +53,6 @@ jobs:
  python -m pip install --upgrade --user pip
  pip install setuptools tox
  pip install -e .[test]
- # Force upgrading packages to workaround the `scilpy` requested versions
- pip install --upgrade matplotlib==3.1.0
- pip install --upgrade numpy==1.23.0
- # Force upgrading packages to avoid numpy-related built-in type deprecation warnings
- pip install --upgrade dipy==1.4.1
- pip install --upgrade fury==0.7.1
- pip install --upgrade h5py==3.0.0
- pip install --upgrade nibabel==3.2.1
- pip install --upgrade scikit-learn==0.24.0
- pip install --upgrade scipy==1.7.0
  python --version
  pip --version
  pip list

pyproject.toml

@@ -20,25 +20,25 @@ dependencies = [
  # common dependencies
  "importlib-metadata",
  "comet-ml == 3.0.0",
- "h5py == 2.10.0",
- "matplotlib >= 2.2.0",
- "numpy >= 1.20.0",
+ "h5py >= 3.7.0",
+ "matplotlib >= 3.6.0",
+ "numpy >= 1.23.0",
  "pandas",
  "pathos",
  "pyyaml",
  "seaborn == 0.11.0",
- "scikit-learn == 0.22.0",
- "scipy == 1.4.0",
+ "scikit-learn >= 1.2.0",
+ "scipy >= 1.9.0",
  "torch == 1.8.1",
  "torchsummary == 1.5.1",
  "tqdm",
  "umap-learn",
  # DWI dependencies
- "dipy == 1.3.0",
- "fury == 0.7.1",
- "nibabel == 3.0.0",
+ "dipy @ git+https://github.com/scilus/[email protected]#egg=dipy)",
+ "fury >= 0.8.0",
+ "nibabel >= 4.0.0",
  # Git dependencies
- "scilpy @ git+https://github.com/scilus/scilpy@1.2.2",
+ "scilpy @ git+https://github.com/scilus/scilpy@1.5.0",
 ]
 description = "Tractography learning"
 dynamic = ["version"]
@@ -53,7 +53,7 @@ requires-python = ">=3.8"
 [project.optional-dependencies]
 test = [
  "hypothesis >= 6.8.0",
- "pytest == 5.3",
+ "pytest >= 7.2.0",
  "pytest-cov",
  "pytest-pep8",
  "pytest-xdist",