baseparser rn

sanjaynagi · Dec 12, 2024 · fdc1681 · fdc1681
1 parent a5eace5
commit fdc1681
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/variantsOfInterest.smk b/workflow/rules/variantsOfInterest.smk
@@ -21,7 +21,7 @@ rule mpileupVariantsOfInterest:
     shell:
         """
         samtools mpileup {input.bam} -r {params.region} -f {params.ref} 2> {log} | 
-        python {params.basedir}/scripts/BaseParser.py > {output} 2>> {log}
+        python {params.basedir}/scripts/base-parser.py > {output} 2>> {log}
         """