Skip to content

Issues: sanger-pathogens/snp-sites

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

31 Open 31 Closed
31 Open 31 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

snp-sites -C with gubbins outputs
#114 opened Sep 10, 2024 by djbradshaw2
1
why snp-sites generated variations numbers different snippy mapping results
#113 opened Jun 6, 2024 by Zjianglin
Warning: No SNPs were detected so there is nothing to output
#112 opened Sep 30, 2023 by sreerampeela
1
How to know the interested SNP position in genome?
#111 opened Apr 20, 2023 by snackens
segmentation fault
#110 opened Mar 15, 2023 by BettyAC
2
How to specify the reference sequence
#109 opened Oct 11, 2022 by ACColin
./configure: line 3036: syntax error near unexpected token CHECK,check' ./configure: line 3036: PKG_CHECK_MODULES(CHECK,check >= 0.8.2,have_check="yes",'
#108 opened Apr 20, 2022 by nick-pestell
How to understand monomorphic sites?
#107 opened Dec 6, 2021 by xuechunxu
1
Recommendation for multiple genome alignment
#106 opened Nov 24, 2021 by snayfach
1
What does *STAR* in ALT stand for
#105 opened Aug 4, 2021 by jielab
3
snp-sites for all ~2 million SARS-COV-2 genomes in GISAID
#104 opened Aug 2, 2021 by jielab
1
Improvement: let user specify pure and ambiguous bases
#103 opened Mar 30, 2021 by arturotorreso
snp-sites docker install issue
#102 opened Mar 29, 2021 by AgatheJouet
error: alignment contains sequences of unequal length
#101 opened Feb 21, 2021 by rderelle
8
Is there a way to extract SNP mutations form the VCF file ?
#99 opened Dec 7, 2020 by ASQWZXED
How to manage heterozygosity in SNP conversion?
#98 opened Sep 29, 2020 by Pryfed
snp-sites -c doesn't produce recognisable alignment for IQtree
#97 opened Sep 14, 2020 by martinastoycheva
1
Warning: No SNPs were detected so there is nothing to output
#96 opened Aug 28, 2020 by pgcudahy
1
32 bit signed integer error
#95 opened Aug 12, 2020 by ethering
1
snp-sites do not see do deletion events
#94 opened Jul 28, 2020 by bioinfornatics
1
snps-sites tool help
#93 opened Jul 19, 2020 by cmaquez
how to visualize VCF file in artemis?
#91 opened Jun 6, 2020 by tushar-ahmed
Possibility to specify known reference
#90 opened Apr 30, 2020 by jcgrenier
2
specify order of output of -C option in help message
#88 opened Jan 3, 2020 by amilesj
2
functionality of -b option alone?
#82 opened Aug 1, 2019 by eam12
1
ProTip! Add no:assignee to see everything that’s not assigned.