You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Is there a way to do this for all samples? Or do I have to enter each position manually? I've tried various permutations of the indexing syntax but it doesn't quite seem to do what I need.
thanks!
The text was updated successfully, but these errors were encountered:
Is there a way to use
bcftools filter
with COUNT to return only positions with a certain number of values for a given FORMAT entry across all samples?For example, I'd like to filter out positions where the number of all AD values is exactly two. I can do this for one sample, like this:
Is there a way to do this for all samples? Or do I have to enter each position manually? I've tried various permutations of the indexing syntax but it doesn't quite seem to do what I need.
thanks!
The text was updated successfully, but these errors were encountered: